The below code works just fine if I comment the sprintf line at the very bottom
int doStepOneAndTwo(){
FILE *fp, *source, *target, *fp1;
PROT prot;
int i, j;
int k, counter;
int n_conf;
int number_of_dir;
int number_of_line;
char sbuff[256];
char str[256];
char str1[256];
int ch;
const char *a[5];
number_of_line = 140;
number_of_dir = ceil( number_of_line /30) + 1;
a[0] = "submit.sh";
a[1] = FN_RUNPRM; // run.prm
a[2] = env.rename_rules; // name.txt
a[3] = env.inpdb; // prot.pdb
a[4] = STEP2_OUT; // step2_out.pdb
for (i=1; i<=number_of_dir; i++)
{
sprintf(str,"_%d", i);
mkdir(str,"0755"); // Create temporary directories
for (j=0;j<5;j++)
{
sprintf(str,"%s", a[j]);
source = fopen(str, "r");
if( source == NULL )
{
printf("Error in doStepOneAndTwo, can't open file source \n");
return USERERR;
}
sprintf(str,"_%d/%s", i, a[j]);
target = fopen(str, "w");
if( target == NULL )
{
fclose(source);
printf("Error in doStepOneAndTwo, can't open file target %s \n",str);
return USERERR;
}
while( (ch = fgetc(source)) != EOF) {
fputc(ch, target);
}
//if(k!=1){printf("fuck me");}else{printf("fuck you \n");}
//k++;
}
}
fclose(source);
fclose(target);
for (k=1; k<2; k++)
{
printf("Yes %d \n",k);
sprintf(str1,"_%d/run.prm",k); // If I comment this line everything works just fine
//chdir("_1");
fp1=fopen(FN_RUNPRM, "r");
}
return 0;
}
The error I get is "Error in doStepOneAndTwo, can't open file target _1/submit.sh" . Basically, the target file is NULL. I'm new to c and don't know what I'm doing wrong.
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